TY - JOUR AU - Banville, D. L. PY - 2006 DA - 2006// TI - Mining chemical structural information from the drug literature JO - Drug Discov Today VL - 11 UR - https://doi.org/10.1016/S1359-6446(05)03682-2 DO - 10.1016/S1359-6446(05)03682-2 ID - Banville2006 ER - TY - JOUR AU - Erhardt, R. A. A. AU - Schneider, R. AU - Blaschke, C. PY - 2006 DA - 2006// TI - Status of text-mining techniques applied to biomedical text JO - Drug Discov Today VL - 11 UR - https://doi.org/10.1016/j.drudis.2006.02.011 DO - 10.1016/j.drudis.2006.02.011 ID - Erhardt2006 ER - TY - JOUR AU - Kemp, N. AU - Michael, L. PY - 1998 DA - 1998// TI - Extraction of Information from the Text of Chemical Patents. 1. Identification of Specific Chemical Names JO - J Chem Inf Comput Sci VL - 38 UR - https://doi.org/10.1021/ci980324v DO - 10.1021/ci980324v ID - Kemp1998 ER - TY - JOUR AU - Murray-Rust, P. PY - 2008 DA - 2008// TI - Chemistry for everyone JO - Nature VL - 451 UR - https://doi.org/10.1038/451648a DO - 10.1038/451648a ID - Murray-Rust2008 ER - TY - JOUR AU - Williams, A. J. PY - 2008 DA - 2008// TI - Internet-based tools for communication and collaboration in chemistry JO - Drug Discov Today VL - 13 UR - https://doi.org/10.1016/j.drudis.2008.03.015 DO - 10.1016/j.drudis.2008.03.015 ID - Williams2008 ER - TY - JOUR AU - Williams, A. J. PY - 2008 DA - 2008// TI - A perspective of publicly accessible/open-access chemistry databases JO - Drug Discov Today VL - 13 UR - https://doi.org/10.1016/j.drudis.2008.03.017 DO - 10.1016/j.drudis.2008.03.017 ID - Williams2008 ER - TY - JOUR AU - Wishart, D. S. AU - Knox, C. AU - Guo, A. C. AU - Cheng, D. AU - Shrivastava, S. AU - Tzur, D. AU - Gautam, B. AU - Hassanali, M. PY - 2008 DA - 2008// TI - DrugBank: a knowledgebase for drugs, drug actions and drug targets JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkm958 DO - 10.1093/nar/gkm958 ID - Wishart2008 ER - TY - JOUR AU - Bodenreider, O. PY - 2004 DA - 2004// TI - The Unified Medical Language System (UMLS): integrating biomedical terminology JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh061 DO - 10.1093/nar/gkh061 ID - Bodenreider2004 ER - TY - JOUR AU - Kolarik, C. AU - Hofmann-Apitius, M. AU - Zimmermann, M. AU - Fluck, J. PY - 2007 DA - 2007// TI - Identification of new drug classification terms in textual resources JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm196 DO - 10.1093/bioinformatics/btm196 ID - Kolarik2007 ER - TY - JOUR AU - Segura-Bedmar, I. AU - Martinez, P. AU - Segura-Bedmar, M. PY - 2008 DA - 2008// TI - Drug name recognition and classification in biomedical texts. A case study outlining approaches underpinning automated systems JO - Drug Discov Today VL - 13 UR - https://doi.org/10.1016/j.drudis.2008.06.001 DO - 10.1016/j.drudis.2008.06.001 ID - Segura-Bedmar2008 ER - TY - JOUR AU - Agarwal, P. AU - Searls, D. B. PY - 2008 DA - 2008// TI - Literature mining in support of drug discovery JO - Brief Bioinform VL - 9 UR - https://doi.org/10.1093/bib/bbn035 DO - 10.1093/bib/bbn035 ID - Agarwal2008 ER - TY - JOUR AU - Corbett, P. AU - Copestake, A. PY - 2008 DA - 2008// TI - Cascaded classifiers for confidence-based chemical named entity recognition JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-S11-S4 DO - 10.1186/1471-2105-9-S11-S4 ID - Corbett2008 ER - TY - JOUR AU - Hettne, K. M. AU - Stierum, R. H. AU - Schuemie, M. J. AU - Hendriksen, P. J. AU - Schijvenaars, B. J. AU - van Mulligen, E. M. AU - Kleinjans, J. AU - Kors, J. A. PY - 2009 DA - 2009// TI - A Dictionary to Identify Small Molecules and Drugs in Free Text JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp535 DO - 10.1093/bioinformatics/btp535 ID - Hettne2009 ER - TY - STD TI - ChemSpider. [http://www.chemspider.com/] UR - http://www.chemspider.com/ ID - ref14 ER - TY - STD TI - ChemMantis. [http://www.chemspider.com/blog/welcome-chemmantis-to-chemzoo-and-a-call-for-contributions-to-the-community.html] UR - http://www.chemspider.com/blog/welcome-chemmantis-to-chemzoo-and-a-call-for-contributions-to-the-community.html ID - ref15 ER - TY - CHAP AU - Kolarik, C. AU - Klinger, R. AU - Friedrich, C. M. AU - Hofmann-Apitius, M. AU - Fluck, J. PY - 2008 DA - 2008// TI - Chemical names: terminological resources and corpora annotation BT - Workshop on Building and evaluating resources for biomedical text mining (6th edition of the Language Resources and Evaluation Conference) ID - Kolarik2008 ER - TY - JOUR AU - Bretcher, J. PY - 1999 DA - 1999// TI - Name=Struct: A Practical Approach to the Sorry State of Real-Life Chemical Nomenclature JO - J Chem Inf Comput Sci VL - 39 UR - https://doi.org/10.1021/ci990062c DO - 10.1021/ci990062c ID - Bretcher1999 ER - TY - JOUR AU - Lipscomb, C. E. PY - 2000 DA - 2000// TI - Medical Subject Headings (MeSH) JO - Bull Med Libr Assoc VL - 88 ID - Lipscomb2000 ER - TY - JOUR AU - Degtyarenko, K. AU - de Matos, P. AU - Ennis, M. AU - Hastings, J. AU - Zbinden, M. AU - McNaught, A. AU - Alcantara, R. AU - Darsow, M. AU - Guedj, M. AU - Ashburner, M. PY - 2008 DA - 2008// TI - ChEBI: a database and ontology for chemical entities of biological interest JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkm791 DO - 10.1093/nar/gkm791 ID - Degtyarenko2008 ER - TY - JOUR AU - Kanehisa, M. AU - Goto, S. AU - Hattori, M. AU - Aoki-Kinoshita, K. F. AU - Itoh, M. AU - Kawashima, S. AU - Katayama, T. AU - Araki, M. AU - Hirakawa, M. PY - 2006 DA - 2006// TI - From genomics to chemical genomics: new developments in KEGG JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkj102 DO - 10.1093/nar/gkj102 ID - Kanehisa2006 ER - TY - JOUR AU - Goto, S. AU - Okuno, Y. AU - Hattori, M. AU - Nishioka, T. AU - Kanehisa, M. PY - 2002 DA - 2002// TI - LIGAND: database of chemical compounds and reactions in biological pathways JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.1.402 DO - 10.1093/nar/30.1.402 ID - Goto2002 ER - TY - JOUR AU - Wishart, D. S. AU - Knox, C. AU - Guo, A. C. AU - Eisner, R. AU - Young, N. AU - Gautam, B. AU - Hau, D. D. AU - Psychogios, N. AU - Dong, E. AU - Bouatra, S. PY - 2009 DA - 2009// TI - HMDB: a knowledgebase for the human metabolome JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkn810 DO - 10.1093/nar/gkn810 ID - Wishart2009 ER - TY - STD TI - ChemIDplus Fact Sheet. [http://www.nlm.nih.gov/pubs/factsheets/chemidplusfs.html] UR - http://www.nlm.nih.gov/pubs/factsheets/chemidplusfs.html ID - ref23 ER - TY - STD TI - CAS REGISTRY and CAS Registry Numbers. [http://www.cas.org/expertise/cascontent/registry/regsys.html] UR - http://www.cas.org/expertise/cascontent/registry/regsys.html ID - ref24 ER - TY - STD TI - Beilstein database. [http://en.wikipedia.org/wiki/Beilstein_database] UR - http://en.wikipedia.org/wiki/Beilstein_database ID - ref25 ER - TY - STD TI - EINECS numbers. [http://en.wikipedia.org/wiki/EINECS] UR - http://en.wikipedia.org/wiki/EINECS ID - ref26 ER - TY - CHAP AU - Schuemie, M. J. AU - Jelier, R. AU - Kors, J. A. PY - 2007 DA - 2007// TI - Peregrine: Lightweight gene name normalization by dictionary lookup BT - Proceedings of the Biocreative 2 workshop ID - Schuemie2007 ER - TY - JOUR AU - Klinger, R. AU - Kolarik, C. AU - Fluck, J. AU - Hofmann-Apitius, M. AU - Friedrich, C. M. PY - 2008 DA - 2008// TI - Detection of IUPAC and IUPAC-like chemical names JO - Bioinformatics VL - 24 UR - https://doi.org/10.1093/bioinformatics/btn181 DO - 10.1093/bioinformatics/btn181 ID - Klinger2008 ER -