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Table 1 Blue Obelisk Open Source Software projects discussed in the text

From: Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on

Name Website
CML Tools
CMLXOM https://bitbucket.org/wwmm/cmlxom/
JUMBO http://sourceforge.net/projects/cml/
Cheminformatics Toolkits
Chemistry Development Kit (CDK) http://cdk.sf.net
Cinfony http://cinfony.googlecode.com
Indigo http://ggasoftware.com/opensource/indigo
JOELib http://sf.net/projects/joelib
Open Babel http://openbabel.org
RDKit http://rdkit.org
Web Applications
ChemDoodle Web Components http://web.chemdoodle.com
Jmol http://jmol.org
Integration
Bioclipse http://www.bioclipse.net
CDK-Taverna http://cdktaverna.wordpress.com
Lensfield2 https://bitbucket.org/sea36/lensfield2/
Interconversion
CIFXOM [95] https://bitbucket.org/wwmm/cifxom/
JUMBO-Converters https://bitbucket.org/wwmm/jumbo-converters/
OPSIN http://opsin.ch.cam.ac.uk
OSRA http://osra.sf.net
Structure Databases
Bingo http://ggasoftware.com/opensource/bingo
Chempound (Chem#) https://bitbucket.org/chempound
Mychem http://mychem.sf.net
OrChem http://orchem.sf.net
pgchem http://pgfoundry.org/projects/pgchem/
Text mining
ChemicalTagger [96] http://chemicaltagger.ch.cam.ac.uk/
OSCAR4 https://bitbucket.org/wwmm/oscar4/
Computational Chemistry
Avogadro http://avogadro.openmolecules.net
cclib http://cclib.sf.net
GaussSum http://gausssum.sf.net
QMForge http://qmforge.sf.net
Computational Drug Design
Confab [97] http://confab.googlecode.com
Pharao http://silicos.be/download
Piramid http://silicos.be/download
Sieve http://silicos.be/download
Stripper http://silicos.be/download
Other Applications
AMBIT2 http://ambit.sf.net
Brunn http://brunn.sf.net
Toxtree http://toxtree.sf.net
XtalOpt http://xtalopt.openmolecules.net