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Table 2 List of default mouse tool plugins

From: Avogadro: an advanced semantic chemical editor, visualization, and analysis platform



Draw Tool

Build and edit atoms

Navigate Tool

Move the camera, rotate, pan, and zoom

Bond Centric

Alter bond lengths, angles, and torsions

Manipulate Tool

Move atoms and selected fragments

Select Tool

Select individual atoms, bonds, or fragments

Auto Rotate Tool

Continuously rotate a molecule for presentations

Auto Optimize Tool

Continuously optimize molecular geometry using


molecular mechanics

Measure Tool

Determine bond lengths, angles, and dihedrals

Align Tool

Rotate and translate to a specified frame of