Table 4 List of default color plugins
From: Avogadro: an advanced semantic chemical editor, visualization, and analysis platform
Name | Description |
|---|---|
Atom Index Color | Color based on atom ID (from atom 1, 2, etc.) |
Charge Color | Color based on predicted electrostatic partial charge |
Custom Color | Color all atoms a specific, custom color |
Distance Color | Color based on distance from one end of the |
| Â | molecule |
Element Color | Standard color scheme, giving each atom a color |
(Default) | defined by its element |
Residue Color | Color based on amino acid or nucleic acid residue |
| Â | (i.e., glycine, histidine, etc.) |
SMARTS Color | Color atoms matching a specific SMARTS pattern |
| Â | with a custom color |