From: Voting-based consensus clustering for combining multiple clusterings of chemical structures
Clustering method | No. of clusters | |||||||
---|---|---|---|---|---|---|---|---|
500 | 600 | 700 | 800 | 900 | 1000 | |||
Consensus clustering | CVAA | Correlation | 74.86 | 78.02 | 82.39 | 84.16 | 85.71 | 87.04 |
Cosine | 74.79 | 78.12 | 81.85 | 84.78 | 85.91 | 87.18 | ||
Euclidean | 71.04 | 74.92 | 78.41 | 81.91 | 84.47 | 86.80 | ||
Hamming | 70.99 | 74.36 | 78.47 | 81.68 | 84.24 | 86.28 | ||
Jaccard | 83.48 | 87.01 | 88.72 | 90.98 | 90.67 | 92.05 | ||
Manhattan | 70.74 | 74.26 | 78.52 | 81.74 | 84.12 | 86.09 | ||
CSPA | Correlation | 70.58 | 73.29 | 74.86 | 76.86 | 79.17 | 82.03 | |
Cosine | 71.23 | 71.85 | 76.43 | 76.55 | 78.06 | 81.21 | ||
Euclidean | 65.33 | 67.09 | 72.49 | 72.73 | 74.50 | 78.75 | ||
Hamming | 64.68 | 66.82 | 69.88 | 71.25 | 74.17 | 76.64 | ||
Jaccard | 69.91 | 71.73 | 74.20 | 76.01 | 77.72 | 79.26 | ||
Manhattan | 63.07 | 65.77 | 68.83 | 71.50 | 74.06 | 77.33 | ||
HGPA | Correlation | 72.61 | 74.85 | 76.4 | 78.32 | 80.22 | 82.26 | |
Cosine | 72.06 | 74.25 | 77.21 | 79.54 | 81.02 | 83.31 | ||
Euclidean | 70.71 | 72.82 | 75.02 | 76.80 | 80.50 | 82.66 | ||
Hamming | 69.45 | 72.21 | 74.08 | 77.71 | 79.67 | 82.36 | ||
Jaccard | 67.88 | 70.58 | 73.93 | 76.56 | 77.65 | 79.67 | ||
Manhattan | 72.74 | 72.14 | 75.68 | 77.94 | 81.42 | 82.97 | ||
Individual clustering | Ward's method | 75.83 | 79.88 | 83.34 | 84.25 | 86.49 | 88.25 |