Table 2 Physicochemical properties of the studied biologically important channels/pores
From: MOLE 2.0: advanced approach for analysis of biomacromolecular channels
PDB | Length (Å) | Hydropathy | Hydrophobicity | Polarity | Charge | Mutability | Polar length | Nonpolar length |
|---|---|---|---|---|---|---|---|---|
1GRM | 25.2 | −0.4 | −0.8 | 3.38 | 0 (0–0) | - | 100% | 0% |
1JJ2 | 79.8 | −1.7 | −0.6 | 20.8 | 4 (6–2)c | 68 | 92% | 8% |
1M56a | 36.2 | 3.0 | 1.0 | 0.6 | 0 | 83 | 4% | 96% |
1M56b | 41.9 | 1.3 | 0.8 | 12.3 | 0 | 84 | 48% | 52% |
2BG9 | 143.7 | −1.1 | −0.2 | 22.3 | −8 (10–18) | 85 | 81% | 19% |
3EYX | 11.5 | 0.1 | 0.1 | 17.0 | 1 (2–1) | 73 | 100% | 0% |