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Table 2 Physicochemical properties of the studied biologically important channels/pores

From: MOLE 2.0: advanced approach for analysis of biomacromolecular channels

PDB Length (Å) Hydropathy Hydrophobicity Polarity Charge Mutability Polar length Nonpolar length
1GRM 25.2 −0.4 −0.8 3.38 0 (0–0) - 100% 0%
1JJ2 79.8 −1.7 −0.6 20.8 4 (6–2)c 68 92% 8%
1M56a 36.2 3.0 1.0 0.6 0 83 4% 96%
1M56b 41.9 1.3 0.8 12.3 0 84 48% 52%
2BG9 143.7 −1.1 −0.2 22.3 −8 (10–18) 85 81% 19%
3EYX 11.5 0.1 0.1 17.0 1 (2–1) 73 100% 0%
  1. a the nonpolar channel in Figure 7C (blue), b the polar channel in Figure 7C (red), c MOLE 2.0 counts the charge on amino acids only, whereas the ribosome channel is also lined by 16 phosphates.