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Table 2 Quantified overall performance of CTS and UniChem on the additive identifier mapping tests

From: Comparative evaluation of open source software for mapping between metabolite identifiers in metabolic network reconstructions: application to Recon 2

   Mean counts  
   In Hits Out Matches Mean
       score
Name only CTS 100 67 141 63 0.30
  UniChem NA NA NA NA NA
+ InChIKey CTS 100 95 112 87 0.
  UniChem 100 80 83 78 0.75
+ ChEBI CTS 100 96 118 93 0.75
  UniChem 100 84 88 82 0.78
+ HMDB CTS 100 96 113 89 0.75
  UniChem 100 85 88 82 0.79
+ KEGG CTS 100 97 116 93 0.78
  UniChem 100 87 91 85 0.82
+ PubChem CTS 100 97 117 94 0.78
  UniChem NA NA NA NA NA
  1. Results of individual tests are given in Additional file 1: Table S2. NA implies that the input identifier type was not covered by the corresponding application. PubChem refers to the PubChem Compound database and KEGG to the KEGG Compound database.