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Table 12 Average and median ( n = 15) time taken to find all rings using existing and improved implementations of AllRingsFinder

From: Efficient ring perception for the Chemistry Development Kit

Chemical structure

Old

New

 

t (ms)

median

sdev

t (ms)

median

sdev

  

t (ms)

  

t (ms)

 

chebi_108

16,293

16,179

540

599

574

105

nci_aug00

80,417

80,339

319

3,478

3,449

143

zinc_frag

41,854

41,747

458

3,786

3,778

60

chembl_17

568,984

568,809

829

25,200

25,181

99

zinc_leads

661,028

661,368

1133

54,490

54,471

101

  1. The newer code includes the overhead of conversion to (and from) the CDK objects. (Table 2). Unprocessed measurements are provided in Additional file 3: All cycles.