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Table 7 Average and median ( n=15 ) time taken to compute the essential cycles using the existing and improved implementations

From: Efficient ring perception for the Chemistry Development Kit

Chemical structure Essential cycles (old) Essential cycles (new)
  mean median sdev mean median sdev
  t (ms) t (ms)   t (ms) t (ms)  
chebi_108 16,561 16,395 615 572 424 451
nci_aug00 128,963 128,663 2,325 2,536 2,459 362
zinc_frag 217,312 217,016 940 3,662 3,574 336
chembl_17 954,954 952,437 20,698 17,235 17,171 293
zinc_leads - - - - - -
  1. The time taken by the new implementation includes adjacency conversion (Table 2). Unprocessed measurements are provided in Additional file 2: Short cycles.