Name | URL | Description | Availability |
---|---|---|---|
ProBiS | Detects structurally similar binding sites without reference to known binding sites | Freely-accessible web server | |
GalaxySite | Combines binding site information from known proteins with molecular docking to predict ligand binding amino acid residues | Freely-accessible web server | |
Surflex-PSIM | Fully automated ligand binding pocket detection and comparison based on surface similarities to other known proteins | Not freely-accessible | |
POP | Integrated computational method for proteome-wide off target identification | Free for academic users and not-for-profit institutions | |
FINDSITEcomb | Threading/structure-based, proteomic-scale virtual ligand screening approach | Freely-accessible for web server for academic users | |
ProBiS-ligands | Detects and transposes ligands between similar binding sites | Freely-accessible web server | |
FragFEATURE | A machine learning approach to predict small molecules fragments preferred by a target | Freely-accessible |