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Table 1 Performance comparison of SIRIUS 3 with MOLGEN-MS/MS using 60 compounds from [49], uncalibrated spectra

From: Fragmentation trees reloaded

 

MOLGEN-MS/MS

SIRIUS2-DP

SIRIUS 3

With isotopes

With isotopes

Without isotopes

With isotopes

10 ppm

5 ppm

10 ppm

5 ppm

10 ppm

5 ppm

10 ppm

5 ppm

Top 1

36

34

34

35

49

45

55

56

Top 2

44

47

50

46

51

51

58

58

Top 5

54

55

52

48

58

60

60

60

Average rank

2.55

2.30

1.57

1.63

1.58

1.5

1.17

1.15

Worst rank

23

20

11

15

10

5

5

5

  1. All tools are run with mass accuracy parameter 5 and 10 ppm. Best entries in italics. Results for MOLGEN-MS/MS and SIRIUS2-DP taken from [49]. In that evaluation, SIRIUS2-DP crashed 7/5 times for 10/5 ppm mass accuracy, and did not consider the correct molecular formula of the compound for 0/6 compounds