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Table 1 Evaluation of the ACR binding site similarities in 1AGM, 3AIC, 1ULV and 3WEM proteins

From: Geomfinder: a multi-feature identifier of similar three-dimensional protein patterns: a ligand-independent approach

ACR

GScore

Smith

ProBIS

MultiBind

SiteEngine

Binding Site

Geomfinder (%)

Waterman

Pairwise

Server

Server

Similarity

 

[48] (%)

[25]

[51]

[52]

1AGM

  

Alig. Score

33,8856

4279,01

vs

34 

32

−3,63

6 same AA

1 same AA

3AIC

   

of 19

of 13

1ULV

   

34,2356

4307,17

vs

25

39

Invalid

3 same AA

1 same AA

3WEM

  

PDB: 3WEM

of 13

of 13

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Journal of Cheminformatics

ISSN: 1758-2946

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