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Table 4 Entrez filters used to search for records with MeSH annotations

From: Literature information in PubChem: associations between PubChem records and scientific articles

Entrez filter

Description

Compound database

 

 has_mesh

Equivalent to “pccompound_mesh”

 has_pharm

Equivalent to “pccompound_mesh_pharm”

 pccompound_mesh

Select compounds annotated with MeSH terms. Equivalent to “has_mesh”

 pccompound_mesh_pharm

Select compounds annotated with MeSH Pharmacological Actions. Equivalent to “has_pharm”

 pccompound_pmc

Select compounds that have associated full-text articles in PubMed Central

 pccompound_pubmed

Select compounds that have depositor-provided cross-references to PubMed articles

 pccompound_pubmed_mesh

Select compounds associated with PubMed abstracts that are annotated with common MeSH annotations

 pccompound_pubmed_publisher

Select compounds that have cross-references to PubMed articles, provided to PubMed by publishers

BioAssay database

 

 pcassy_pmc

Select assays that have associated full-text articles in PubMed Central

 pcassay_pubmed

Select assays that have depositor-provided cross-references to PubMed articles

 pcassay_pubmed_major

Select assays that have cross-references to the PubMed articles that contains the original bioactivity data in the assays