Skip to main content

Table 4 Entrez filters used to search for records with MeSH annotations

From: Literature information in PubChem: associations between PubChem records and scientific articles

Entrez filter Description
Compound database  
 has_mesh Equivalent to “pccompound_mesh”
 has_pharm Equivalent to “pccompound_mesh_pharm”
 pccompound_mesh Select compounds annotated with MeSH terms. Equivalent to “has_mesh”
 pccompound_mesh_pharm Select compounds annotated with MeSH Pharmacological Actions. Equivalent to “has_pharm”
 pccompound_pmc Select compounds that have associated full-text articles in PubMed Central
 pccompound_pubmed Select compounds that have depositor-provided cross-references to PubMed articles
 pccompound_pubmed_mesh Select compounds associated with PubMed abstracts that are annotated with common MeSH annotations
 pccompound_pubmed_publisher Select compounds that have cross-references to PubMed articles, provided to PubMed by publishers
BioAssay database  
 pcassy_pmc Select assays that have associated full-text articles in PubMed Central
 pcassay_pubmed Select assays that have depositor-provided cross-references to PubMed articles
 pcassay_pubmed_major Select assays that have cross-references to the PubMed articles that contains the original bioactivity data in the assays