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Fig. 4 | Journal of Cheminformatics

Fig. 4

From: bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming

Fig. 4

a Binding site of bound chain (PDB ID: 5p2p, CHAIN ID: A). The binding site is composed of residues (green) within 8 Å from the ligand (red). b Binding site of unbound chain (PDB ID: 3p2p, CHAIN ID: A, blue). The detection of binding site is based on the bound template (PDB ID: 1oxr, CHAIN ID: A, black) by mapping the ligand of template into unbound chain. And the binding site is composed of residues (green) within 10 Å from the ligand (red), which is different from 8 Å for bound chain prediction

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