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Table 1 Comparison of the top1 and top3 success rates for various methods using 210 bound structures

From: bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming

Method Top1a (%) Top3a (%)
bSiteFinder 94.8 95.7
LISEb 83 94
MPK2b 81 95
MPK1b 75 93
Q-SiteFinderb 70 90
LIGSITECSCb 75
LIGSITECSb 70 86
PASSb 51 80
SURFNETb 42 57
  1. aThe MCC scores of the Top1 and Top3 are 0.95 and 0.97 respectively with 210 bound structures
  2. bThe success rates of these methods were taken from Xie and Hwang [32]