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Table 1 Comparison of the top1 and top3 success rates for various methods using 210 bound structures

From: bSiteFinder, an improved protein-binding sites prediction server based on structural alignment: more accurate and less time-consuming

Method

Top1a (%)

Top3a (%)

bSiteFinder

94.8

95.7

LISEb

83

94

MPK2b

81

95

MPK1b

75

93

Q-SiteFinderb

70

90

LIGSITECSCb

75

LIGSITECSb

70

86

PASSb

51

80

SURFNETb

42

57

  1. aThe MCC scores of the Top1 and Top3 are 0.95 and 0.97 respectively with 210 bound structures
  2. bThe success rates of these methods were taken from Xie and Hwang [32]