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Table 2 Comparison of technical features

From: Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

 

Approach

Interface

Availability

Input file formats

Output file formats

RDT

Structure-based

Web and desktop application

Free

RXN, SMILES

RXN, SMILES

DREAM

Optimisation-based

Web application

Free

RXN, SMILES

RXN

MWED

Optimisation-based

Desktop application

Free for academics

RXN, SMILES

SMILES, MetaCyc

CLCA

Structure-based

Algorithm

Free

SMILES

SMILES

ICMAP

Structure-based

Desktop application

Commercial

RXN

RXN

AutoMapper

Structure-based

Desktop application

Free for academics

RXN, SMILES

RXN, SMILES