From: Scoria: a Python module for manipulating 3D molecular data
Action | Python with NumPy/SciPy | Python without dependencies | PyPy (incompatible with dependencies) |
---|---|---|---|
Save PDB | 0.0055 ± 0.0010 | 0.0085 ± 0.0016 | 0.0036 ± 0.0043 |
Load PDB (without calculating bonds by distance) | 0.0104 ± 0.0010 | 0.0643 ± 0.0028 | 0.0198 ± 0.0163 |
Save PYM | 0.0024 ± 0.0013 | N/A | N/A |
Load PYM | 0.0008 ± 0.0004 | N/A | N/A |