Skip to main content

Advertisement

Table 3 The success rates of our MODPEP method in reproducing protein-bound conformations for the peptides with different lengths when various ensemble sizes were considered

From: Efficient conformational ensemble generation of protein-bound peptides

Peptide Success rate (%)
Length Number 50 100 150 200 250 300 500 1000
3 11 100 100 100 100 100 100 100 100
4 43 100 100 100 100 100 100 100 100
5 32 100 100 100 100 100 100 100 100
6 47 97.9 97.9 97.9 97.9 97.9 97.9 97.9 97.9
7 49 98.0 100 100 100 100 100 100 100
8 60 83.3 91.7 93.3 95.0 96.7 96.7 96.7 96.7
9 138 75.4 92.8 96.4 97.8 98.6 98.6 98.6 99.3
10 60 71.7 81.7 90.0 96.7 96.7 98.3 98.3 98.3
11 62 45.2 58.1 69.4 77.4 79.0 80.6 82.3 90.3
12 40 37.5 42.5 47.5 52.5 55.0 57.5 80.0 92.5
13 50 38.0 48.0 50.0 58.0 62.0 64.0 74.0 80.0
14 45 31.1 33.3 42.2 48.9 51.1 53.3 62.2 80.0
15 33 30.3 36.4 36.4 36.4 36.4 36.4 42.4 57.6
16 29 27.6 34.5 34.5 41.4 44.8 44.8 48.3 51.7
17 12 41.7 41.7 41.7 50.0 50.0 50.0 58.3 58.3
18 25 36.0 40.0 40.0 44.0 44.0 44.0 48.0 52.0
19 21 57.1 61.9 61.9 61.9 66.7 66.7 66.7 71.4
20 16 43.8 50.0 50.0 50.0 50.0 50.0 50.0 50.0
21 21 33.3 42.9 42.9 42.9 42.9 47.6 57.1 57.1
22 21 57.1 61.9 61.9 61.9 61.9 61.9 61.9 71.4
23 10 50.0 50.0 50.0 50.0 50.0 50.0 50.0 50.0
24 17 41.2 41.2 47.1 47.1 47.1 47.1 47.1 52.9
25 15 60.0 60.0 60.0 60.0 60.0 60.0 66.7 66.7
26 10 40.0 40.0 40.0 40.0 40.0 40.0 40.0 40.0
27 10 20.0 30.0 30.0 30.0 30.0 30.0 30.0 30.0
28 14 35.7 42.9 42.9 42.9 50.0 50.0 50.0 57.1
29 14 21.4 21.4 21.4 21.4 21.4 21.4 21.4 28.6
30 5 60.0 60.0 60.0 60.0 60.0 60.0 60.0 60.0
All 910 61.6 68.7 71.5 74.3 75.4 76.0 79.0 82.9