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Fig. 3 | Journal of Cheminformatics

Fig. 3

From: Computer-aided design of multi-target ligands at A1R, A2AR and PDE10A, key proteins in neurodegenerative diseases

Fig. 3

Docking studies predicted molecular interactions characteristic of the 4,6-substituted 2-amino-pyridin-3-carbonitriles with the A2AR protein crystal structure (PDB ID: 4EIY), A1R homology model, and PDE10A protein crystal structure (PDB ID: 4DDL), which are displayed for representative multi-target ligands with the following combinations: compound 8 (A1R–PDE10A), 18 (A1R–A2AR), and 25 (A2AR–PDE10A): a interactions with A2AR: the overlaid compounds 18 and 25 exhibit H-bonds via amino and carbonitrile groups with Asn253, and the pyridine rings are π-stacked with Phe168 b interactions with A1R: the overlaid compounds 8 and 18 exhibit H-bonds via amino and carbonitrile groups with Asn254, and the pyridine rings are π-stacked with Phe171 c interactions with PDE10A: the overlaid compounds 8 and 25 have the pyridine rings π-stacked with Phe686 and Phe719. The molecular interactions predicted for the active molecules are consistent with observed interactions between co-crystallised ligands and their corresponding protein crystal structures (PDB ID: 4EIY and 4DDL) [33, 34] and the interactions with the A1R homology model reported in the literature [51, 52]

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