Skip to main content

Advertisement

Table 3 TIPS teams—annotation server overview

From: Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm

ID Name Server contact Affiliation Output format AS location Programing language License Refs
103 SIA* Philippe Thomas German Research Center for Artificial Intelligence JSON Germany Java Apache License 2 [37, 38]
106 LeadMine WS Daniel Lowe NextMove Software JSON Ireland Java
107 SCHEMA Hong-Jie Dai National Taitung University JSON Republic of China (Taiwan) C# [39]
108 MRI Chen-Kai Wang Taipei Medical University JSON Republic of China (Taiwan) C# [40]
111 DiseaseExtract Jitendra Jonnagaddala UNSW Australia JSON Australia Java Apache License 2 [41]
114 Tagger* Lars Juhl Jensen University of Copenhagen JSON/TSV Denmark C++ The BSD 2-Clause ‘Simplified’ or ‘FreeBSD’ License [42, 43]
116 Neji—BeCalm TIPS Task* André Santos IEETA—Institute of Electronics and Informatics Engineering of Aveiro ALL Portugal Java CC by-nc-sa 3.0 [44, 45]
117 MER* André Lamúrias LaSIGE, Faculdade de Ciências, Universidade de Lisboa, Portugal TSV Portugal Bash MIT [46, 47]
120 Olelo Hendrik Folkerts Hasso Plattner Institute BioC Germany Java [48]
121 LeadMine WS (AWS Free Tier) Daniel Lowe NextMove Software JSON United States of America Java
122 OntoGene* Lenz Furrer Institute for Computational Linguistics, University of Zurich BioC, JSON, TSV Switzerland Python GNU Affero General Public License [49, 50]
124 TextImager CempS Wahed Hemati Text Technology Lab—Goethe-Universität Frankfurt TSV Germany Java [51]
126 TextImager GproM Wahed Hemati Text Technology Lab - Goethe-Universität Frankfurt TSV Germany Java [51]
127 READ-Biomed Read Biomed University of Melbourne JSON Australia Java/Scala [52]
128 NLProt Miguel Madrid Structural Computational Biology Group of the CNIO JSON Spain Crystal MIT [53]
  1. The AS location is retrieved from the IP of each AS. Teams that also published a systems description paper in this special issue of the Journal of Cheminformatics is marked by an asterisk