Skip to main content

TableĀ 3 Common generic methods defined in patRoon to process workflow data

From: patRoon: open source software platform for environmental mass spectrometry based non-target screening

Generic Purpose
length(), show(), algorithm(), names(), groupNames() Obtain general object information such as object length and unique identifiers for contained results
filter() Rule-based filtering operations
[, [[, $ operators Subsetting or extracting data
as.data.table(), as.data.frame() Conversion to data.table or data.frame object
unique(), overlap() Extract unique or overlapping features across replicates
consensus() Generates a consensus between different objects of the same class
plot(), plotEIC(),
plotSpec()
Plot general, chromatographic and annotation data
plotChord(), plotUpSet(), plotVenn() Comparison of feature data or workflow objects from different algorithms by chord, UpSet and Venn diagrams