Table 3 AUPR scores (mean and standard deviation obtained by nested 5-fold cross-validation) on the DBEColi dataset in the four \(S_1\), \(S_2\), \(S_3\), or \(S_4\) settings, and for a test sample positive:negative ratio 1:5
| Â | \(S_1\) | \(S_2\) | \(S_3\) | \(S_4\) |
|---|---|---|---|---|
kronSVM | \(\mathit{61.55} \pm \mathit{3.11}\) | \(\mathit{28.95} \pm \mathit{7.66}\) | \(\mathit{60.96} \pm \mathit{3.73}\) | \(24.4 \pm 8.8\) |
NRLMF | \(\mathit{59.89} \pm \mathit{4.35}\) | \(\mathit{35.62} \pm \mathit{8.07}\) | \(\mathit{60.06} \pm \mathit{2.73}\) | \(\mathit{34.5} \pm \mathit{9.75}\) |
FNN | \(51.55 \pm 2.55\) | \(24.26 \pm 3.91\) | \(49.34 \pm 3.11\) | \(22.97 \pm 6.59\) |
Chemogenomic neural network (CN) | \(49.08 \pm 4.31\) | \(\mathit{28.38} \pm \mathit{5.81}\) | \(46.14 \pm 4.92\) | \(\mathit{27.0} \pm \mathit{6.96}\) |
RF with proteochemometric features | \(53.49 \pm 2.19\) | \(23.6 \pm 4.13\) | \(51.16 \pm 4.32\) | \(22.51 \pm 5.36\) |