From: Learning protein-ligand binding affinity with atomic environment vectors
Model | Training set | Test set | RMSE | Pearson’s r |
---|---|---|---|---|
\(\Delta\)-AEScore\(^{\dag }\) | Refined 2013 | CASF-2013 | 1.53 | 0.74 |
\(\Delta\)-AEScore\(^{\dag }\) (no H) | Refined 2013 | CASF-2013 | 1.52 | 0.74 |
\(\Delta _\text {vina}\text {RF}\) [49] | Refined 2013 | CASF 2013 | — | 0.69 |
Vina (optim) | — | CASF-2013 | 1.82 | 0.61 |
\(\Delta\)-AEScore\(^{\dag }\) | Refined 2016 | CASF-2016 | 1.34 | 0.79 |
\(\Delta\)-AEScore\(^{\dag }\) (no H) | Refined 2016 | CASF-2016 | 1.32 | 0.80 |
Refined 2013 | CASF 2016 | — | 0.81 | |
Vina (optim) | — | CASF-2016 | 1.75 | 0.59 |