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Fig. 3 | Journal of Cheminformatics

Fig. 3

From: ProLIF: a library to encode molecular interactions as fingerprints

Fig. 3

Residue interaction network for the bovine rhodopsin. Residues are colored by transmembrane domain (TM). Interactions that only appear in the active (PDB 6FK6) or inactive (PDB 1U19) state of the receptor are respectively shown in green or orange, and the ones that appear in both are in grey. Each residue node is scaled based on its number of interactions. For clarity, interactions that occur within the same TM (as labelled by GPCRdb) and interactions between residues that are less than 3 residues apart are not shown, as well as hydrophobic interactions (as defined in the implementation) and residues that did not participate in any interaction

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