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Fig. 2 | Journal of Cheminformatics

Fig. 2

From: Notes on molecular fragmentation and parameter settings for a dissipative particle dynamics study of a C10E4/water mixture with lamellar bilayer formation

Fig. 2

Optimal (minimum energy) superstructure formation of a binary C10E4/water mixture at 298 K with a C10E4 mass fraction of 0.75 with periodic boundary conditions in all directions and an integration time step of 0.04. Top row: Front (horizontal x-, vertical z-axis) cross-section view of the simulation box for a layered start geometry (left), minimized start geometry (middle) and simulation snapshot after one million simulation steps (63 µs, right). Bottom row: Front (horizontal x-, vertical z-axis) cross-section view of the simulation box for a random start geometry (left), simulation snapshot after one million simulation steps (63 µs, middle) and simulation snapshot after 4,112 million simulation steps (258 µs, right) with completed formation of stacked bilayers. For the same random start geometry with disabled periodic boundary in z-direction the stacked bilayer superstructure emerges after 74 thousand simulation time steps (4 µs), i.e. more than 60 times faster. The particle colors are identical to those in Fig. 1

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