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Table 2 Overview of penalties assigned to modes.
From: Fast automated placement of polar hydrogen atoms in protein-ligand complexes
| Mode | penalty |
|---|---|
| Flipped group | 0.1 |
| Protonated carboxyl group | 0.2 |
| Positively charged histidine | 0.1 |
| Uncharged lysine | 0.1 |
