Figure 3
From: Consistent two-dimensional visualization of protein-ligand complex series
Target sequence alignment. The global target sequence contains one entry for each residue being part of the series complex ensemble. A local target sequence is derived by deleting all entries which have no corresponding residue in the individual complex in question. After inserting the matching edges (black), they are searched for intersections. By modification of the complex tree edges (blue and green), in this case a rotation of the green edge, the intersections are removed.