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Table 1 DUD data sets

From: 4D Flexible Atom-Pairs: An efficient probabilistic conformational space comparison for ligand-based virtual screening

 

Filtered sets

Original sets

target

actives

decoy

actives

decoys

ACE

46

1796

49

1797

AChE

99

3859

107

3891

ADA

23

927

39

927

ALR2

26

986

26

995

AmpC

21

786

21

786

AR

68

2848

79

2854

CDK2

47

2070

72

2074

COMT

11

468

11

468

COX-1

23

910

25

911

COX-2

212

12606

426

13289

DHFR

190

8350

410

8366

EGFr

365

10303

475

15996

ERagonist

63

2568

67

2570

ERantagonist

18

1058

39

1448

FGFr1

71

3462

120

4550

FXa

64

1633

146

5743

GART

8

155

40

879

GPB

52

2135

52

2947

GR

32

2585

78

2947

HIVPR

4

9

62

2038

HIVRT

34

1494

43

1519

HMGR

25

1423

35

3478

HSP90

23

975

37

979

InhA

57

2707

86

3266

MR

13

636

15

634

NA

49

1713

49

1874

P38

137

6779

454

9140

PARP

31

1350

35

1351

PDE5

26

1697

88

1977

PDGFrb

124

5603

170

5980

PNP

25

1036

49

1036

PPARγ

6

40

85

3117

PR

22

920

27

1041

RXR α

18

575

20

750

SAHH

33

1346

33

1346

SRC

98

5679

159

6319

thrombin

23

1148

72

2456

TK

22

891

22

891

trypsin

9

718

49

1664

VEGFr2

48

2712

88

2906

  1. Number of active and decoy compounds for the original and filtered DUD targets.