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Table 1 List of properties and flags that are automatically calculated when importing new molecules

From: Mining collections of compounds with Screening Assistant 2

Type

Name

Description

Ref.

SMARTS

Reactive

Reactive compounds (15)

[12]

 

Warhead

Warhead compounds (20)

[12]

 

PAINS <15

Pan Assay Interference Compounds (409)

[13]

 

PAINS <150

Pan Assay Interference Compounds (55)

[13]

 

PAINS >150

Pan Assay Interference Compounds (16)

[13]

Flags

RO5

Lipinski’s rule of 5 *

[14]

 

RO3

Fragment rule of 3 *

[40]

 

Exotic

Unrecognised atom type *

-

 

Salt

Disconnected structures

-

Descriptors

Weight

Molecular weight

-

 

LogP

Caculated logP *

-

 

Heavy atoms

Number of heavy atoms

-

 

HBA

Number of hydrogen bond acceptors *

-

 

HBD

Number of hydrogen bond donors *

-

 

Halogens

Number of halogen atoms

-

 

Rot. Bonds

Number of rotatable bonds *

-

 

Ring count

Number of rings (SSSR)

-

 

Max Ring size

Maximum size of rings

-

  1. The definition of descriptors marked by an asterisk is handler-specific.