From: iDrug: a web-accessible and interactive drug discovery and design platform
Name | Method | Refs | Free for academia |
---|---|---|---|
Cavtiy | Detect and score potential binding sites of a protein | Yes | |
Pocket v.2 | Derive pharmacophore models based on a given receptor of complex structure | [21] | Yes |
PharmMapper | Pharmacophore mapping (online web service) | [22] | Yes |
SHAFTS | 3D similarity calculation | Yes | |
Cyndi | Molecular conformation generation | Yes | |
Pybel | Python wrapper for the OpenBabel cheminformatics toolkit | Yes |