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Table 2 The list of molecular fingerprints covered by ChemDes

From: ChemDes: an integrated web-based platform for molecular descriptor and fingerprint computation

Type of molecular fingerprints

The origin of algorithm

FP2 fingerprints

A

FP3 fingerprints

A

FP4 fingerprints

A, B

MACCS fingerprints

A, B, C, D, E, F

Daylight-type fingerprints

B

E-state fingerprints

B, C, D, E

Atom Paris fingerprints

B, D, E

Torsions fingerprints

B, D

Morgan fingerprints

B, D

CDK fingerprints

C, E

Pubchem fingerprints

C, E

CDK extended fingerprints

C, E

Klekota-Roth fingerprints

C, E

GraphOnly fingerprints

C, E

Hybridization fingerprints

C

Substructure fingerprints

C, E

RDK fingerprints

D

Layered fingerprints

D

Pattern fingerprints

D

Klekota-Roth fingerprint count

E

Substructure fingerprint count

E

2D atom pairs count

E

Othersa

F

  1. A, B, C, D, E, F stands for Pybel, Chemopy, CDK, RDKit, PaDEL, and jCompoundMapper, respectively
  2. aFingerprints from jCompoundMapper: DFS, ASP, AP2D, AT2D, AP3D, AT3D, CATS2D, CATS3D, PHAP2POINT2D, PHAP3POINT2D, PHAP2POINT3D, PHAP3POINT3D, ECFP, ECFPVariant, LSTAR, SHED, RAD2D, RAD3D, MACCS