Skip to main content

Table 2 Summary of cross-references from literature-extracted bioassay data to PubMed articles

From: Literature information in PubChem: associations between PubChem records and scientific articles

Source NAID-PMID NSID-PMID NCID-PMID NPMID NAID NSID NCID
ChEMBLa 829,503 1,068,347 1,058,637 55,582 828,594 860,191 849,149
PDBbindb 6946 20,221 16,993 5252 4 10,543 8158
IUPHAR/BPS guide to pharmacologyc 442 1088 1080 151 55 273 264
BindingDBd 143 3114 3113 121 19 3101 3098
GLIDAe 6 19,474 19,458
  1. NAID, NSID and NCID are the number of PubChem assays, substances and compounds extracted from scientific articles, respectively; and NAID-PMID, NSID-PMID and NCID-PMID are the number of cross-references from PubChem assays, substances, and compounds to PubMed articles, respectively. NPMID is the number of unique PubMed articles from which the assay data are extracted
  2. aRef. [22]. https://www.ebi.ac.uk/chembl/
  3. bRef. [23]. http://www.pdbbind-cn.org
  4. cRef. [16]. http://www.guidetopharmacology.org
  5. dRef. [26]. https://www.bindingdb.org
  6. eRef. [27]. http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/