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Table 2 The average accuracies of our MODPEP method measured using the Cα (cRMSD), backbone (bRMSD), and all heavy atoms (aRMSD) for the peptides with different lengths when an ensemble of 200 conformations were considered for each peptide

From: Efficient conformational ensemble generation of protein-bound peptides

Peptide RMSD (Å)
Length Number cRMSD bRMSD aRMSD
3 11 0.04 0.42 1.18
4 43 0.21 0.62 1.29
5 32 0.45 0.87 1.69
6 47 0.65 1.01 1.97
7 49 0.96 1.20 2.25
8 60 1.29 1.50 2.59
9 138 1.56 1.65 2.85
10 60 1.67 1.74 2.93
11 62 2.04 2.04 3.31
12 40 2.09 2.09 3.41
13 50 2.29 2.34 3.69
14 45 2.64 2.65 3.96
15 33 2.58 2.56 3.99
16 29 2.66 2.61 4.00
17 12 2.56 2.61 4.14
18 25 2.93 2.90 4.20
19 21 2.38 2.37 3.55
20 16 3.14 2.94 4.44
21 21 3.05 2.84 4.08
22 21 2.43 2.43 3.71
23 10 3.01 3.06 4.37
24 17 3.11 2.96 4.33
25 15 2.71 2.65 3.69
26 10 2.77 3.05 4.46
27 10 3.95 4.18 5.49
28 14 3.05 3.16 4.43
29 14 4.24 4.07 5.33
30 5 2.72 2.75 3.95
All 910 1.90 1.99 3.18