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Table 2 Comparison between MER and BioPortal on the HPO gold-standard corpus

From: MER: a shell script and annotation server for minimal named entity recognition and linking

  NER NER+NEL ART MTSA
  P R F P R F
BioPortal 0.6862 0.4463 0.5408 0.6118 0.3979 0.4822 1.15E+00 s 1.45E−01 s
MER 0.7184 0.4514 0.5544 0.6155 0.3868 0.4751 7.32E−01 s 9.59E−02 s