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Table 4 Neji concept recognition results on a variety of corpora and concept types

From: Configurable web-services for biomedical document annotation

Corpus Concept type F-score (%) Method
CRAFT [19] Species [9] 95 D
Cell [9] 92 D
Gene and protein [9] 76 ML
Chemicals [9] 65 D
Cellular component [9] 83 D
Biological process and molecular function [9] 63 D
NCBI Disease [20] Disorders [9] 85 D
Anem [21] Anatomy [9] 82 D
BC II gene mention [22] Gene and protein [13] 87 ML
tmVar [16] Genetic variants [18] 86 ML
BC IV ChemdNER [15] Chemicals [17] 87 ML
BC V.5 CEMP [23, 24] Chemicals [25] 87 ML
  1. D dictionary; ML machine-learning