Fig. 8
From: EDock: blind protein–ligand docking by replica-exchange monte carlo simulation
The illustration of ligand docking from 3du4A_BS01_PLP based on I-TASSER predicted models. The ligand poses by EDock (yellow), AutoDock Vina (magenta), and DOCK6 (blue) have an RMSD of 0.52, 6.46, and 8.16 Å from native (red), respectively. The background shows the superposition of the I-TASSER model (pink) on the native structure (cyan) of the receptor structure with a TM-score = 0.956