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Table 5 Computation time for series of diverse size

From: Flame: an open source framework for model development, hosting, and usage in production environments

Series

Original series size

Compounds removeda

Final series size

Time (s)b

A

2685

11

2674

20 s

B

5832

0

5832

32 s

C

126,368

114

126,254

600 s (10 min)

D

480,000

249

479,751

2160 s (36 min)

  1. Computation tasks involving structure normalization, computation of RDKit descriptors, generation of a XGBoost model, and validation using fivefold validation (for series A and B) and twofold validation (for series C and D).
  2. aCompounds removed from the computation because RDKit was unable to compute molecular descriptors
  3. bWall clock times, in a desktop PC with Windows 10 professional 64 bits, 32b Gb RAM and an AMD Ryzen 5 3600(6 cores) CPU