Table 1 Overview of proteomic datasets used in this case study and their characteristics.
From: PROTEOMAS: a workflow enabling harmonized proteomic meta-analysis and proteomic signature mapping
Project id | Species | In vitro/ in vivo model | Trait | Total number of proteins in raw data | Sufficient metadata available? | Number of pairs of conditions compared |
|---|---|---|---|---|---|---|
PXD007223 | Human | A549 | Lung cancer | 2008 | Yes | 1 |
PXD000861 | Human | BEAS-2B | Lung cancer | 3670 | Yes | 4 |
PXD018895 | Human | A549 | Lung cancer | 3744 | Yes | 1 |
PXD000853 | Human | A549 | Lung cancer | 5197 | Yes | 2 |
PXD005698 | Human | A549, H358 | Lung cancer | 942 | Yes | 2 |
PXD005733 | Human | Lung cancer and adjacent tissue | Lung cancer | 1936 | Yes | 1 |
PXD007137* | Human | NCI-H650 | Lung cancer | 1321 | No | 2 |
PXD004818* | Human | Lung tissue | Lung cancer | 2811 | No | 6 |
PXD007180 | Human | A549 | Smoking | 2590 | Yes | 4 |
PXD020470 | Human | HPA-HULEC co-culture | SARS CoV-2 | 6753 | Yes | 2 |
PXD021685 | Human | THP-1 | SARS CoV-2 | 1787 | Yes | 2 |
PXD007148h | Human | A549 | COPD | 466 | Yes | 2 |
PXD007148m | Mouse | Lung tissue | COPD | 875 | Yes | 2 |
PXD016664h | Human | Lung tissue and BALF | IPA | 5118 | Yes | 1 |
PXD016664m | Mouse | Lung tissue and BALF | IPA | 3054 | Yes | 2 |
PXD014022 | Human | A549 | IPA and P. aeruginosa infection | 4184 | 3 | |
PXD005834* | Mouse | A549 | IPA | 2790 | No | 4 |
PXD018569 | Human | NCI-H2030 | > 30 drugs | 8773 | Yes | 27 |
PXD023041* | Mouse | Lung tissue | Influenza | 3440 | No | 0 |
PXD013244 | Mouse | Blood serum | Gu-Ben-Fang-Xiao decoction (GBFXD) | 3429 | Yes | 2 |
PXD016148 | Mouse | BALF | NMs (Fe, Co, CB) | 1525 | Yes | 22 |
PXD019267 | Human | THP-1 | 31 NMs | 3665 | Yes | 33 |
PXD018900 | Rat | BALF | NM-401 (MWCNT) | 1223 | Yes | 8 |
PXD005970 | Human | HBEC-3KT | NM-400 (MWCNT) | 5483 | Yes | 2 |
PXD025423 | Human | HBEC-3KT | NM-62002a (TiO2) | 5483 | Yes | 2 |