PROTEOMAS: a workflow enabling harmonized proteomic meta-analysis and proteomic signature mapping

Table 2 Overview on the number of significantly enriched gene set for different background datasets for each analyzed trait in the case study

Trait	# Significantly altered GO terms	# Significantly altered KEGG pathways	# Significantly altered REACTOME pathways	# Significantly altered HALLMARK sets
Lung cancer	1462	46	181	35
IPA	1065	42	189	22
CNT NM-400	396	11	44	12
COPD	312	6	110	8
Drug	1739	47	329	25
CB	19	0	6	0
Co NM	6	1	7	2
Fe NM	80	1	18	0
FeCo NM	127	1	30	0
CNT NM-403	201	2	13	3
Ag NM	185	6	21	5
Au NM	417	10	93	9
Other CNT	300	6	79	8
CuO NM	300	3	65	9
ND	145	1	10	1
LPS	140	4	19	7
QD	276	8	66	8
TiO2	696	33	171	17
Virus	446	21	73	16

ISSN: 1758-2946