From: TB-IECS: an accurate machine learning-based scoring function for virtual screening
Scoring Functions | Energy terms | Number of descriptors |
---|---|---|
Autodock | \({E}_{vdW}\), \({E}_{\mathrm{h}bond}\), \({E}_{elec}\), \({E}_{tor}\),\({E}_{sol}\) | 5 |
Affiscore | \({E}_{polar}\), \({E}_{sol}\),\({E}_{\mathrm{h}ydrophobic}, {E}_{entropy}\) | 4 |
Asp | \({E}_{internal}\), \({E}_{clash}\),\({E}_{map}\) | 3 |
Chemscore | \({E}_{\mathrm{h}bond}\), \({E}_{entropy}\), \({E}_{internal}\), \({E}_{clash}\), \({E}_{\mathrm{h}ydrophobic}\),\({E}_{Metal}\) | 6 |
DSX | \({E}_{pair}\), \({E}_{internal}\),\({E}_{sol}\) | 3 |
GalaxyDock BP2 score | \({E}_{vdW}\), \({E}_{\mathrm{h}bond}\), \({E}_{elec}\), \({E}_{sol}\), \({E}_{internal}\), \({E}_{\mathrm{h}ydrophobic}\),\({E}_{drugscire}\) | 7 |
Goldscore | \(\Delta {G}_{vdW}\), \(\Delta {G}_{\mathrm{h}bond}\),\(\Delta {G}_{internal}\) | 3 |
NNScore | \({E}_{vdW}\), \({E}_{\mathrm{h}bond}\), \({E}_{\mathrm{h}ydrophobic}\), \({E}_{nn\_pair}\),\({E}_{nn\_elec}\) | 5 |
ChemPLP | \({E}_{\mathrm{h}bond}\), \({E}_{Metal}\), \({E}_{clash}\), \({E}_{plp}\),\({E}_{internal}\) | 5 |
Smina | \({E}_{vdW}\), \({E}_{\mathrm{h}bond}\), \({E}_{elec}\), \({E}_{\mathrm{h}ydrophobic}\), \({E}_{non\_hydrophobic}\),\({E}_{sol}\) | 6 |
SMoG2016 | \({E}_{vdW}\), \({E}_{entropy}\),\({E}_{KBP2016}\) | 3 |
Glide SP | \({E}_{vdW}\), \({E}_{\mathrm{h}bond}\), \({E}_{elec}\), \({E}_{\mathrm{h}ydrophobic}\), \({E}_{Metal}\),\({E}_{entropy}\) | 6 |
Glide XP | \({E}_{vdW}\), \({E}_{\mathrm{h}bond}\), \({E}_{elec}\), \({E}_{\mathrm{h}ydrophobic}\), \({E}_{Metal}\), \({E}_{entropy}\),\({E}_{\pi -cation}\) | 7 |
Vina | \({E}_{vdW}\), \({E}_{entropy}\), \({E}_{\mathrm{h}bond}\),\({E}_{\mathrm{h}ydrophobic}\) | 4 |
X-score | \({E}_{vdW}\), \({E}_{entropy}\), \({E}_{\mathrm{h}bond}\),\({E}_{\mathrm{h}ydrophobic}\) | 4 |
Total | \({E}_{vdW}\), \({E}_{\mathrm{h}bond}\), \({E}_{elec}\), \({E}_{\mathrm{h}ydrophobic}\), \({E}_{sol}\), \({E}_{entropy}\), \({E}_{Knowledge}\), \({E}_{clash}\), \({E}_{Metal}\), \({E}_{internal}\), \({E}_{non\_hydrophobic}\),\({E}_{nn\_pair}\) | 12 |