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Table 15 Mean square errors on validation and test data of models selected with different scenarios

From: Extended study on atomic featurization in graph neural networks for molecular property prediction

Dataset

Scenario

I

II

III

IV

ESOL (random)

arch.

repr.

val. \(\downarrow\)

test \(\downarrow\)

2095

F

0.086

0.118

2095

\(\underline{\textsc {F}-\textsc {A}}\)

0.083

0.120

\(\underline{996}\)

\(\underline{\textsc {Li}}\)

0.078

0.126

\(\underline{1743}\)

Li

0.078

0.107

QM9

arch.

repr.

val. \(\downarrow\)

test \(\downarrow\)

914

F

4.531

9.193

914

\(\underline{\textsc {Yang}}\)

2.711

14.732

\(\underline{917}\)

Yang

2.659

24.953

917

Yang

2.659

24.953

  1. The representation search is performed over representations 1–12 and literature representations. Results for ESOL (scaffold), Rat and Human datasets are identical as in Table 14