Skip to main content

Table 2 Node features of molecular atoms

From: PMF-CPI: assessing drug selectivity with a pretrained multi-functional model for compound–protein interactions

No.

Feature

Dimension

1

One-hot encoding of the atom element

44

2

One-hot encoding of the degree of the atom in the molecule, which is the 11 number of directly-bonded neighbors (atoms)

11

3

One-hot encoding of the total number of H bound to the atom

11

4

One-hot encoding of the number of implicit H bound to the atom

11

5

Whether the atom is aromatic

1

 

All

78