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Table 1 Statistics of features of BM scaffolds across different compound sets

From: Analysis of metabolites in human gut: illuminating the design of gut-targeted drugs

Compound set

# mols

# scaffs

Scaff per mol

% mols with scaff

Rings per scaff [avg (SD)]

Arings per scaff [avg(SD)]

Hetrings per scaff [avg(SD)]

DrugBank

1419

874

0.62

92.9

3.54 (1.54)

0.59 (0.32)

0.50 (0.30)

Gut/Serum

516

95

0.18

65.12

2.42 (1.24)

0.41 (0.43)

0.62 (0.43)

Gut-noFL

664

122

0.18

52.41

2.4 (1.41)

0.32 (0.41)

0.55 (0.45)

  1. For each compound set, the number of compounds (# mols), number of unique scaffolds (# scaff), number of unique scaffolds by molecule (scaff per mol), percentage of molecules with scaffold (% mols with scaff), average and standard deviation (SD) of the number of rings per unique scaffold {ring per scaff [avg (SD)]}, average and SD of the fraction of aromatic rings per unique scaffold {arings per scaff [avg (SD)]}, and average and SD of the fraction of heterocyclic rings per unique scaffold {hetrings per scaff [avg(SD)]}, are shown