Table 3 The performance ( \(R^2\) ) of HybirdGCN with individual features or ablated features. We present \(R^2\) on both the 5-fold cross-validation set and the test set of eSOL
From: HybridGCN for protein solubility prediction with adaptive weighting of multiple features
Individual feature | Validation | Test | Ablated feature | Validation | Test |
|---|---|---|---|---|---|
- | - | - | -None (HybridGCN) | 0.495± 0.012 | 0.497 |
ESM | 0.372± 0.012 | 0.365 | -ESM | 0.476± 0.013 | 0.488 |
HMM | 0.337± 0.015 | 0.331 | -HMM | 0.478± 0.018 | 0.490 |
PSSM | 0.333± 0.012 | 0.332 | -PSSM | 0.479± 0.015 | 0.491 |
BLOSUM | 0.329± 0.016 | 0.317 | -BLOSUM | 0.485± 0.015 | 0.490 |
SPIDER3 | 0.293± 0.014 | 0.289 | -SPIDER3 | 0.490± 0.012 | 0.493 |
AAPHY7 | 0.231± 0.019 | 0.227 | -AAPHY7 | 0.488± 0.014 | 0.490 |