Table 2 Time performance comparison of the flow transfer algorithm (FTA), CavVis [5], and Fpocket
From: CRAFT: a web-integrated cavity prediction tool based on flow transfer algorithm
Protein | No. of atoms | FTA without properties (s) | CavVis(s) | FTA with properties | Fpocket(s) |
|---|---|---|---|---|---|
1VPN | 11134 | 0.62 | 3.23 | 1.44 | 8.22 |
2YWB | 14709 | 0.97 | 4.55 | 2.77 | 18.83 |
3M4D | 16404 | 1.26 | 5.71 | 4.29 | 20.71 |
1TYF | 20062 | 2.42 | 6.77 | 6.88 | 34.79 |
1XO6 | 23781 | 1.96 | 7.95 | 4.63 | 36.64 |