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Fig. 5 | Journal of Cheminformatics

Fig. 5

From: Preventing lipophilic aggregation in cosolvent molecular dynamics simulations with hydrophobic probes using Plumed Automatic Restraining Tool (PART)

Fig. 5

Overlap between HIV protease ligands and the calculated densities from a HIV protease cosolvent MD simulation with PART generated restraints. All grid points with GFE values ≤ −1.5 kcal/mol are shown as a mesh (green: hydrophobic, dark blue: donor, red: acceptor, orange: negatively charged, cyan: positively charged)

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