Splendiani A, Burger A, Paschke A, Romano P, Marshall M: Biomedical semantics in the Semantic Web. J Biomed Semantics. 2011, 2 (Suppl 1): S1-10.1186/2041-1480-2-S1-S1.
Article
Google Scholar
Murray-Rust P, Rzepa HS, Williamson MJ, Willighagen EL: Chemical markup, XML, and the World Wide Web. 5. Applications of chemical metadata in RSS aggregators. J Chem Inf Comput Sci. 2004, 44 (2): 462-469.
Article
CAS
Google Scholar
Frey JG: Dark Lab or Smart Lab: The Challenges for 21st Century Laboratory Software. Org Process Res Dev. 2004, 8 (6): 1024-1035. 10.1021/op049895g.
Article
CAS
Google Scholar
Hunter J, Henderson M, Khan I: Collaborative Annotation of 3D Crystallographic Models. J Chem Inf Model. 2007, 47 (6): 2475-2484. 10.1021/ci700173y.
Article
CAS
Google Scholar
Wordle. [http://www.wordle.net/]
Lassila O, Swick RR: Resource Description Framework(RDF) Model and Syntax Specification. 1999, [http://www.w3.org/TR/1999/REC-rdf-syntax-19990222]
Google Scholar
Bradley JC, Neylon C, Guha R, Williams A, Hooker B, Lang ASID, Friesen B, Bohinski T, Bulger D, Federici M, Hale J, Mancinelli J, Mirza KB, Moritz MJ, Rein D, Tchakounte C, Truong HT: Open Notebook Science Challenge: Solubilities of Organic Compounds in Organic Solvents. Nature Precedings. 2010, [http://dx.doi.org/10.1038/npre.2010.4243.2]
Google Scholar
Berners-Lee T, Hendler J, Lassila O: The Semantic Web. Sci Am. 2001, 284 (5): 34-43. 10.1038/scientificamerican0501-34.
Article
Google Scholar
Belleau F, Nolin M, Tourigny N, Rigault P, Morissette J: Bio2RDF: Towards a mashup to build bioinformatics knowledge systems. J Biomed Inf. 2008, 41 (5): 706-716. 10.1016/j.jbi.2008.03.004.
Article
Google Scholar
Chen B, Dong X, Jiao D, Wang H, Zhu Q, Ding Y, Wild D: Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data. BMC Bioinf. 2010, 11: 255-10.1186/1471-2105-11-255.
Article
Google Scholar
Hardy B, Douglas N, Helma C, Rautenberg M, Jeliazkova N, Jeliazkov V, Nikolova I, Benigni R, Tcheremenskaia O, Kramer S, Girschick T, Buchwald F, Wicker J, Karwath A, Gutlein M, Maunz A, Sarimveis H, Melagraki G, Afantitis A, Sopasakis P, Gallagher D, Poroikov V, Filimonov D, Zakharov A, Lagunin A, Gloriozova T, Novikov S, Skvortsova N, Druzhilovsky D, Chawla S, Ghosh I, Ray S, Patel H, Escher S: Collaborative development of predictive toxicology applications. J Cheminf. 2010, 2: 7-10.1186/1758-2946-2-7.
Article
Google Scholar
Bradley JC, Guha R, Lang A, Lindenbaum P, Neylon C, Williams A, Willighagen EL: Beautifying Data in the Real World, Sebastopol, US: O'Reilly Media, Inc. 2009, chap 16:
Google Scholar
Beckett D: RDF/XML Syntax Specification (Revised). 2004, [http://www.w3.org/TR/2004/REC-rdf-syntax-grammar-20040210/]
Google Scholar
Beckett D, Grant J: RDF Test Cases. 2004, [http://www.w3.org/TR/2004/REC-rdf-testcases-20040210/]
Google Scholar
Berners-Lee T: Notation 3 - An readable language for data on the Web. 2006, [http://www.w3.org/DesignIssues/Notation3.html]
Google Scholar
Adida B, Birbeck M, McCarron S, Pemberton S: RDFa in XHTML: Syntax and Processing. 2008, W3C, [http://www.w3.org/TR/2008/REC-rdfa-syntax-20081014/]
Google Scholar
Alexander K: RDF in JSON. Proceedings of the 4th Workshop on Scripting for the Semantic Web, Tenerife, Spain, June 02, 2008, Volume 368 of CEUR Workshop Proceedings. 2008
Google Scholar
Herman I: New RDF Working Group, RDF/JSON, RDF API... 2010, [http://www.w3.org/QA/2010/12/new_rdf_working_group_rdfjson.html]
Google Scholar
Prud'hommeaux E, Seaborne A: SPARQL Query Language for RDF. 2008, [http://www.w3.org/TR/2008/REC-rdf-sparql-query-20080115/]
Google Scholar
Jankowski O: SPARQL to Chart. 2010, [http://www.pharmash.com/posts/2010-09-27-sparql-to-chart.html]
Google Scholar
Prud'hommeaux E: Federated SPARQL. 2007, [http://www.w3.org/2007/05/SPARQLfed/]
Google Scholar
Cheung KH, Frost HR, Marshall MS, Prud'hommeaux E, Samwald M, Zhao J, Paschke A: A journey to Semantic Web query federation in the life sciences. BMC Bioinf. 2009, 10 (Suppl 10): S10-10.1186/1471-2105-10-S10-S10.
Article
Google Scholar
McGuinness DL, Van Harmelen F: OWL Web Ontology Language Overview. 2004, [http://www.w3.org/TR/2004/REC-owl-features-20040210/]
Google Scholar
Gordon JE: Chemical inference. 3. Formalization of the language of relational chemistry: ontology and algebra. J Chem Inf Comput Sci. 1988, 28 (2): 100-115.
Article
CAS
Google Scholar
Konyk M, De Leon A, Dumontier M: Chemical Knowledge for the Semantic Web. J Chem Inf Comput Sci. 2008, 169-176.
Google Scholar
Moreira DA, Musen MA: OBO to OWL: a protege OWL tab to read/save OBO ontologies. Bioinformatics (Oxford, England). 2007, 23 (14): 1868-1870. 10.1093/bioinformatics/btm258.
Article
CAS
Google Scholar
Feldman HJ, Dumontier M, Ling S, Haider N, Hogue CWV: CO: A chemical ontology for identification of functional groups and semantic comparison of small molecules. FEBS Lett. 2005, 579 (21): 4685-4691. 10.1016/j.febslet.2005.07.039.
Article
CAS
Google Scholar
Degtyarenko K, de Matos P, Ennis M, Hastings J, Zbinden M, McNaught A, Alcántara R, Darsow M, Guedj M, Ashburner M: ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 2008, 36 (suppl 1): D344-D350.
CAS
Google Scholar
Hull D: GO faster ChEBI with Reasonable Biochemistry. Nature Precedings. 2008, [http://dx.doi.org/10.1038/npre.2008.2435.1]
Google Scholar
Aranguren M, Bechhofer S, Lord P, Sattler U, Stevens R: Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL. BMC Bioinf. 2007, 8: 57-10.1186/1471-2105-8-57.
Article
Google Scholar
Wiener H: Structural Determination of Paraffin Boiling Points. J Am Chem Soc. 1947, 69: 17-20. 10.1021/ja01193a005.
Article
CAS
Google Scholar
Carroll JJ, Klyne G: Resource Description Framework (RDF): Concepts and Abstract Syntax. 2004, [http://www.w3.org/TR/2004/REC-rdf-concepts-20040210/]
Google Scholar
W3C OWL Working Group: OWL 2 Web Ontology Language Document Overview. 2009, [http://www.w3.org/TR/2009/REC-owl2-overview-20091027/]
Google Scholar